ASReml 2.00b [01 Jul 2006] Build: j [14 Sep 2007] 64 bit 21 Aug 2008 11:15:45.977 256.00 Mbyte IBM AIX-64 Licensed to: INRA Site License *********************************************************** * SYNTAX change: A/B now means A A.B * * * * Contact support@asreml.co.uk for licensing and support * ***************************************************** ARG * Folder: ranim !P A-inverse retrieved from ainverse.bin PEDIGREE [pedasreml.txt ] has 1515 identities, 5040 Non zero elements Reading inv.giv skipping 0 header lines Inverse G structure of 1515 rows having 1134827 non zero cells read from inv.giv QUALIFIERS: !MVINCLUDE !MAXIT 600 Reading record0f2_asreml.txt FREE FORMAT skipping 0 lines Univariate analysis of logvie Using 505 records of 505 read Model term Size #miss #zero MinNon0 Mean MaxNon0 1 ranim !P 1515 0 0 418.0 1079. 1515. 2 logvie Variate 0 0 2.600 2.848 3.153 3 sexe 2 0 0 1 1.7465 2 4 gen_prp 3 0 0 1 1.4693 3 5 rearing 2 0 0 1 1.2416 2 6 L_size 3 0 0 1 2.0079 3 7 prp_me 2 0 0 1 1.5545 2 8 saison_misebas 16 0 0 1 7.8990 16 9 giv(ranim,1) 1515 0 0 418 1079.4079 1515 331 identity 331 units in section 1; initial variance 0.14479E-02 111 identity 111 units in section 2; initial variance 0.31676E-02 63 identity 63 units in section 3; initial variance 0.52994E-02 1515 Ainverse 0.1000 Structure for ranim has 1515 levels defined 1515 inv.giv 0.1000 Structure for giv(ranim,1) has 1515 levels defined Forming 3056 equations: 26 dense. Initial updates will be shrunk by factor 0.041 Notice: 5 negative pivot(s) in MME treated as singular. ** Notice **: GIV matrix not positive definite: Negative pivots 52 1515 Notice: 8 singularities detected in design matrix. 1 LogL= 462.596 S2= 1.0000 487 df Notice: 4 singularities appeared in Average Information matrix This could be a problem of scale or a problem with the model. It is preferable to revise the model to remove the singularity. Specify !AISING qualifier to force the job to continue. Warning: The singularity count includes 5 equation(s) with negative pivot(s). Warning: 4 singularities in AI matrix. Source Model terms Gamma Component Comp/SE % C Residual 505 487 Variance[ 1] 331 0 0.144709E-02 0.144709E-02 0.00 0 ? Variance[ 2] 111 0 0.316763E-02 0.316763E-02 0.00 0 S Variance[ 3] 63 0 0.529942E-02 0.529942E-02 0.00 0 S ranim Ainverse 1515 0.100000 0.100000 0.00 0 S giv(ranim,1) inv.giv 1515 0.100000 0.100000 0.00 0 S Warning: Code B - fixed at a boundary (!GP) F - fixed by user ? - liable to change from P to B P - positive definite C - Constrained by user (!VCC) U - unbounded S - Singular Information matrix S means there is no information in the data for this parameter. Very small components with Comp/SE ratios of zero sometimes indicate poor scaling. Consider rescaling the design matrix in such cases. Analysis of Variance NumDF F_inc 4 gen_prp 3 621.43 5 rearing 1 0.41 6 L_size 2 0.04 7 prp_me 1 1.20 8 saison_misebas 11 1.09 1 ranim 1515 effects fitted ( 16 are zero) 9 giv(ranim,1) 1515 effects fitted ( 16 are zero) 5 possible outliers: see .res file 2 possible outliers: see .res file SLOPES FOR LOG(ABS(RES)) on LOG(PV) for Section 3 3.75 Finished: 21 Aug 2008 11:16:52.684 Singularity in Average Information Matrix